Hierarchical Event Descriptor (HED) Python ToolsΒΆ
Note: this is a work in progress. More information is coming.
- HED API reference
- errors
- error_messages
SIDECAR_HED_USED()
SIDECAR_HED_USED_COLUMN()
def_error_bad_location()
def_error_def_tag_in_definition()
def_error_duplicate_definition()
def_error_invalid_def_extension()
def_error_no_group_tags()
def_error_no_takes_value()
def_error_wrong_group_tags()
def_error_wrong_placeholder_count()
invalid_column_ref()
nested_column_ref()
onset_error_def_unmatched()
onset_error_inset_before_onset()
onset_error_offset_before_onset()
onset_error_same_defs_one_row()
onset_no_def_found()
onset_too_many_defs()
onset_too_many_groups()
onset_wrong_placeholder()
onset_wrong_type_tag()
self_column_ref()
sidecar_error_blank_hed_string()
sidecar_error_hed_data_type()
sidecar_error_invalid_pound_sign_count()
sidecar_error_too_many_pound_signs()
sidecar_error_unknown_column()
sidecar_na_used()
val_error_bad_def_expand()
val_error_comma_missing()
val_error_def_expand_unmatched()
val_error_def_expand_value_extra()
val_error_def_expand_value_missing()
val_error_def_unmatched()
val_error_def_value_extra()
val_error_def_value_missing()
val_error_duplicate_clumn()
val_error_duplicate_group()
val_error_duplicate_tag()
val_error_empty_group()
val_error_extra_column()
val_error_extra_comma()
val_error_extra_slashes_spaces()
val_error_hed_blank_column()
val_error_invalid_char()
val_error_invalid_extension()
val_error_invalid_parent()
val_error_invalid_tag_character()
val_error_invalid_unit()
val_error_missing_column()
val_error_multiple_unique()
val_error_no_valid_tag()
val_error_no_value()
val_error_parentheses()
val_error_prefix_invalid()
val_error_require_child()
val_error_sidecar_key_missing()
val_error_sidecar_with_column()
val_error_tag_extended()
val_error_tag_group_tag()
val_error_tildes_not_supported()
val_error_top_level_tag()
val_error_top_level_tags()
val_error_unknown_namespace()
val_warning_capitalization()
val_warning_default_units_used()
val_warning_required_prefix_missing()
- error_reporter
check_for_any_errors()
create_doc_link()
get_printable_issue_string()
get_printable_issue_string_html()
hed_error()
hed_tag_error()
replace_tag_references()
sort_issues()
- ErrorHandler
ErrorHandler.__init__()
ErrorHandler.add_context_and_filter()
ErrorHandler.filter_issues_by_severity()
ErrorHandler.format_error()
ErrorHandler.format_error_from_context()
ErrorHandler.format_error_with_context()
ErrorHandler.get_error_context_copy()
ErrorHandler.pop_error_context()
ErrorHandler.push_error_context()
ErrorHandler.reset_error_context()
ErrorHandler.val_error_unknown()
- error_types
- ColumnErrors
- DefinitionErrors
DefinitionErrors.__init__()
DefinitionErrors.BAD_DEFINITION_LOCATION
DefinitionErrors.BAD_PROP_IN_DEFINITION
DefinitionErrors.DEF_TAG_IN_DEFINITION
DefinitionErrors.DUPLICATE_DEFINITION
DefinitionErrors.INVALID_DEFINITION_EXTENSION
DefinitionErrors.NO_DEFINITION_CONTENTS
DefinitionErrors.PLACEHOLDER_NO_TAKES_VALUE
DefinitionErrors.WRONG_NUMBER_GROUPS
DefinitionErrors.WRONG_NUMBER_PLACEHOLDER_TAGS
DefinitionErrors.WRONG_NUMBER_TAGS
- ErrorContext
- ErrorSeverity
- OnsetErrors
OnsetErrors.__init__()
OnsetErrors.INSET_BEFORE_ONSET
OnsetErrors.OFFSET_BEFORE_ONSET
OnsetErrors.ONSET_DEF_UNMATCHED
OnsetErrors.ONSET_NO_DEF_TAG_FOUND
OnsetErrors.ONSET_PLACEHOLDER_WRONG
OnsetErrors.ONSET_SAME_DEFS_ONE_ROW
OnsetErrors.ONSET_TAG_OUTSIDE_OF_GROUP
OnsetErrors.ONSET_TOO_MANY_DEFS
OnsetErrors.ONSET_WRONG_NUMBER_GROUPS
- SchemaAttributeErrors
SchemaAttributeErrors.__init__()
SchemaAttributeErrors.SCHEMA_ALLOWED_CHARACTERS_INVALID
SchemaAttributeErrors.SCHEMA_ATTRIBUTE_INVALID
SchemaAttributeErrors.SCHEMA_ATTRIBUTE_VALUE_INVALID
SchemaAttributeErrors.SCHEMA_CHILD_OF_DEPRECATED
SchemaAttributeErrors.SCHEMA_CONVERSION_FACTOR_NOT_POSITIVE
SchemaAttributeErrors.SCHEMA_DEFAULT_UNITS_INVALID
SchemaAttributeErrors.SCHEMA_DEPRECATED_INVALID
SchemaAttributeErrors.SCHEMA_IN_LIBRARY_INVALID
SchemaAttributeErrors.SCHEMA_SUGGESTED_TAG_INVALID
SchemaAttributeErrors.SCHEMA_UNIT_CLASS_INVALID
SchemaAttributeErrors.SCHEMA_VALUE_CLASS_INVALID
- SchemaErrors
- SchemaWarnings
- SidecarErrors
SidecarErrors.__init__()
SidecarErrors.BLANK_HED_STRING
SidecarErrors.INVALID_POUND_SIGNS_CATEGORY
SidecarErrors.INVALID_POUND_SIGNS_VALUE
SidecarErrors.SIDECAR_BRACES_INVALID
SidecarErrors.SIDECAR_HED_USED
SidecarErrors.SIDECAR_HED_USED_COLUMN
SidecarErrors.SIDECAR_NA_USED
SidecarErrors.UNKNOWN_COLUMN_TYPE
SidecarErrors.WRONG_HED_DATA_TYPE
- ValidationErrors
ValidationErrors.__init__()
ValidationErrors.CHARACTER_INVALID
ValidationErrors.COMMA_MISSING
ValidationErrors.DEFINITION_INVALID
ValidationErrors.DEF_EXPAND_INVALID
ValidationErrors.DEF_INVALID
ValidationErrors.DUPLICATE_COLUMN_BETWEEN_SOURCES
ValidationErrors.DUPLICATE_COLUMN_IN_LIST
ValidationErrors.HED_BLANK_COLUMN
ValidationErrors.HED_DEF_EXPAND_INVALID
ValidationErrors.HED_DEF_EXPAND_UNMATCHED
ValidationErrors.HED_DEF_EXPAND_VALUE_EXTRA
ValidationErrors.HED_DEF_EXPAND_VALUE_MISSING
ValidationErrors.HED_DEF_UNMATCHED
ValidationErrors.HED_DEF_VALUE_EXTRA
ValidationErrors.HED_DEF_VALUE_MISSING
ValidationErrors.HED_GROUP_EMPTY
ValidationErrors.HED_LIBRARY_UNMATCHED
ValidationErrors.HED_MISSING_REQUIRED_COLUMN
ValidationErrors.HED_MULTIPLE_TOP_TAGS
ValidationErrors.HED_TAG_GROUP_TAG
ValidationErrors.HED_TAG_REPEATED
ValidationErrors.HED_TAG_REPEATED_GROUP
ValidationErrors.HED_TOP_LEVEL_TAG
ValidationErrors.HED_UNKNOWN_COLUMN
ValidationErrors.INVALID_PARENT_NODE
ValidationErrors.INVALID_TAG_CHARACTER
ValidationErrors.NODE_NAME_EMPTY
ValidationErrors.NO_VALID_TAG_FOUND
ValidationErrors.ONSET_OFFSET_INSET_ERROR
ValidationErrors.PARENTHESES_MISMATCH
ValidationErrors.PLACEHOLDER_INVALID
ValidationErrors.REQUIRED_TAG_MISSING
ValidationErrors.SIDECAR_AND_OTHER_COLUMNS
ValidationErrors.SIDECAR_INVALID
ValidationErrors.SIDECAR_KEY_MISSING
ValidationErrors.STYLE_WARNING
ValidationErrors.TAG_EMPTY
ValidationErrors.TAG_EXPRESSION_REPEATED
ValidationErrors.TAG_EXTENDED
ValidationErrors.TAG_EXTENSION_INVALID
ValidationErrors.TAG_GROUP_ERROR
ValidationErrors.TAG_INVALID
ValidationErrors.TAG_NAMESPACE_PREFIX_INVALID
ValidationErrors.TAG_NOT_UNIQUE
ValidationErrors.TAG_REQUIRES_CHILD
ValidationErrors.TILDES_UNSUPPORTED
ValidationErrors.UNITS_INVALID
ValidationErrors.UNITS_MISSING
ValidationErrors.VALUE_INVALID
ValidationErrors.VERSION_DEPRECATED
- exceptions
- HedExceptions
HedExceptions.__init__()
HedExceptions.BAD_COLUMN_NAMES
HedExceptions.BAD_HED_LIBRARY_NAME
HedExceptions.BAD_PARAMETERS
HedExceptions.BAD_WITH_STANDARD
HedExceptions.BAD_WITH_STANDARD_VERSION
HedExceptions.CANNOT_PARSE_JSON
HedExceptions.CANNOT_PARSE_XML
HedExceptions.FILE_NOT_FOUND
HedExceptions.GENERIC_ERROR
HedExceptions.HED_SCHEMA_NODE_NAME_INVALID
HedExceptions.INVALID_DATAFRAME
HedExceptions.INVALID_EXTENSION
HedExceptions.INVALID_FILE_FORMAT
HedExceptions.INVALID_HED_FORMAT
HedExceptions.INVALID_LIBRARY_PREFIX
HedExceptions.IN_LIBRARY_IN_UNMERGED
HedExceptions.ROOTED_TAG_DOES_NOT_EXIST
HedExceptions.ROOTED_TAG_HAS_PARENT
HedExceptions.ROOTED_TAG_INVALID
HedExceptions.SCHEMA_DUPLICATE_PREFIX
HedExceptions.SCHEMA_HEADER_INVALID
HedExceptions.SCHEMA_HEADER_MISSING
HedExceptions.SCHEMA_LIBRARY_INVALID
HedExceptions.SCHEMA_SECTION_MISSING
HedExceptions.SCHEMA_UNKNOWN_HEADER_ATTRIBUTE
HedExceptions.SCHEMA_VERSION_INVALID
HedExceptions.WIKI_DELIMITERS_INVALID
HedExceptions.WIKI_LINE_START_INVALID
HedExceptions.WIKI_SEPARATOR_INVALID
- hed.errors.exceptions.HedFileError
- HedExceptions
- known_error_codes
- schema_error_messages
schema_error_SCHEMA_ALLOWED_CHARACTERS_INVALID()
schema_error_SCHEMA_CHILD_OF_DEPRECATED()
schema_error_SCHEMA_CONVERSION_FACTOR_NOT_POSITIVE()
schema_error_SCHEMA_DEFAULT_UNITS_INVALID()
schema_error_SCHEMA_DEPRECATED_INVALID()
schema_error_SCHEMA_IN_LIBRARY_INVALID()
schema_error_SCHEMA_SUGGESTED_TAG_INVALID()
schema_error_SCHEMA_UNIT_CLASS_INVALID()
schema_error_SCHEMA_VALUE_CLASS_INVALID()
schema_error_hed_duplicate_from_library()
schema_error_hed_duplicate_node()
schema_error_unknown_attribute()
schema_warning_SCHEMA_INVALID_CAPITALIZATION()
schema_warning_invalid_chars_desc()
schema_warning_invalid_chars_tag()
schema_warning_non_placeholder_class()
- error_messages
- models
- base_input
- BaseInput
BaseInput.__init__()
BaseInput.assemble()
BaseInput.column_metadata()
BaseInput.combine_dataframe()
BaseInput.convert_to_form()
BaseInput.convert_to_long()
BaseInput.convert_to_short()
BaseInput.expand_defs()
BaseInput.get_column_refs()
BaseInput.get_def_dict()
BaseInput.get_worksheet()
BaseInput.reset_mapper()
BaseInput.set_cell()
BaseInput.shrink_defs()
BaseInput.to_csv()
BaseInput.to_excel()
BaseInput.validate()
BaseInput.COMMA_DELIMITER
BaseInput.EXCEL_EXTENSION
BaseInput.FILE_EXTENSION
BaseInput.FILE_INPUT
BaseInput.STRING_INPUT
BaseInput.TAB_DELIMITER
BaseInput.TEXT_EXTENSION
BaseInput.columns
BaseInput.dataframe
BaseInput.dataframe_a
BaseInput.has_column_names
BaseInput.loaded_workbook
BaseInput.name
BaseInput.onsets
BaseInput.series_a
BaseInput.series_filtered
BaseInput.worksheet_name
- BaseInput
- basic_search
- column_mapper
- ColumnMapper
ColumnMapper.__init__()
ColumnMapper.check_for_blank_names()
ColumnMapper.check_for_mapping_issues()
ColumnMapper.get_column_mapping_issues()
ColumnMapper.get_def_dict()
ColumnMapper.get_tag_columns()
ColumnMapper.get_transformers()
ColumnMapper.set_column_map()
ColumnMapper.set_column_prefix_dictionary()
ColumnMapper.set_tag_columns()
ColumnMapper.column_prefix_dictionary
ColumnMapper.sidecar_column_data
ColumnMapper.tag_columns
- ColumnMapper
- column_metadata
- def_expand_gather
- definition_dict
- definition_entry
- df_util
- expression_parser
- hed_group
- HedGroup
HedGroup.__init__()
HedGroup.append()
HedGroup.check_if_in_original()
HedGroup.copy()
HedGroup.find_def_tags()
HedGroup.find_exact_tags()
HedGroup.find_placeholder_tag()
HedGroup.find_tags()
HedGroup.find_tags_with_term()
HedGroup.find_wildcard_tags()
HedGroup.get_all_groups()
HedGroup.get_all_tags()
HedGroup.get_as_form()
HedGroup.get_as_indented()
HedGroup.get_as_long()
HedGroup.get_as_short()
HedGroup.get_first_group()
HedGroup.get_original_hed_string()
HedGroup.groups()
HedGroup.lower()
HedGroup.remove()
HedGroup.replace()
HedGroup.sort()
HedGroup.sorted()
HedGroup.tags()
HedGroup.is_group
HedGroup.span
- HedGroup
- hed_string
- HedString
HedString.__init__()
HedString.append()
HedString.check_if_in_original()
HedString.copy()
HedString.expand_defs()
HedString.find_def_tags()
HedString.find_exact_tags()
HedString.find_placeholder_tag()
HedString.find_tags()
HedString.find_tags_with_term()
HedString.find_top_level_tags()
HedString.find_wildcard_tags()
HedString.from_hed_strings()
HedString.get_all_groups()
HedString.get_all_tags()
HedString.get_as_form()
HedString.get_as_indented()
HedString.get_as_long()
HedString.get_as_original()
HedString.get_as_short()
HedString.get_first_group()
HedString.get_original_hed_string()
HedString.groups()
HedString.lower()
HedString.remove()
HedString.remove_definitions()
HedString.remove_refs()
HedString.replace()
HedString.shrink_defs()
HedString.sort()
HedString.sorted()
HedString.split_hed_string()
HedString.split_into_groups()
HedString.tags()
HedString.validate()
HedString.CLOSING_GROUP_CHARACTER
HedString.OPENING_GROUP_CHARACTER
HedString.is_group
HedString.span
- HedString
- hed_tag
- HedTag
HedTag.__init__()
HedTag.base_tag_has_attribute()
HedTag.copy()
HedTag.get_stripped_unit_value()
HedTag.get_tag_unit_class_units()
HedTag.has_attribute()
HedTag.is_basic_tag()
HedTag.is_column_ref()
HedTag.is_placeholder()
HedTag.is_takes_value_tag()
HedTag.is_unit_class_tag()
HedTag.is_value_class_tag()
HedTag.lower()
HedTag.replace_placeholder()
HedTag.tag_exists_in_schema()
HedTag.tag_modified()
HedTag.value_as_default_unit()
HedTag.attributes
HedTag.base_tag
HedTag.default_unit
HedTag.expandable
HedTag.expanded
HedTag.extension
HedTag.long_tag
HedTag.org_base_tag
HedTag.org_tag
HedTag.schema_namespace
HedTag.short_base_tag
HedTag.short_tag
HedTag.tag
HedTag.unit_classes
HedTag.value_classes
- HedTag
- model_constants
- DefTagNames
DefTagNames.__init__()
DefTagNames.DEFINITION_KEY
DefTagNames.DEFINITION_ORG_KEY
DefTagNames.DEF_EXPAND_KEY
DefTagNames.DEF_EXPAND_ORG_KEY
DefTagNames.DEF_KEY
DefTagNames.DEF_KEYS
DefTagNames.DEF_ORG_KEY
DefTagNames.INSET_KEY
DefTagNames.INSET_ORG_KEY
DefTagNames.OFFSET_KEY
DefTagNames.OFFSET_ORG_KEY
DefTagNames.ONSET_KEY
DefTagNames.ONSET_ORG_KEY
DefTagNames.TEMPORAL_KEYS
- DefTagNames
- sidecar
- spreadsheet_input
- SpreadsheetInput
SpreadsheetInput.__init__()
SpreadsheetInput.assemble()
SpreadsheetInput.column_metadata()
SpreadsheetInput.combine_dataframe()
SpreadsheetInput.convert_to_form()
SpreadsheetInput.convert_to_long()
SpreadsheetInput.convert_to_short()
SpreadsheetInput.expand_defs()
SpreadsheetInput.get_column_refs()
SpreadsheetInput.get_def_dict()
SpreadsheetInput.get_worksheet()
SpreadsheetInput.reset_mapper()
SpreadsheetInput.set_cell()
SpreadsheetInput.shrink_defs()
SpreadsheetInput.to_csv()
SpreadsheetInput.to_excel()
SpreadsheetInput.validate()
SpreadsheetInput.COMMA_DELIMITER
SpreadsheetInput.EXCEL_EXTENSION
SpreadsheetInput.FILE_EXTENSION
SpreadsheetInput.FILE_INPUT
SpreadsheetInput.STRING_INPUT
SpreadsheetInput.TAB_DELIMITER
SpreadsheetInput.TEXT_EXTENSION
SpreadsheetInput.columns
SpreadsheetInput.dataframe
SpreadsheetInput.dataframe_a
SpreadsheetInput.has_column_names
SpreadsheetInput.loaded_workbook
SpreadsheetInput.name
SpreadsheetInput.onsets
SpreadsheetInput.series_a
SpreadsheetInput.series_filtered
SpreadsheetInput.worksheet_name
- SpreadsheetInput
- string_util
- tabular_input
- TabularInput
TabularInput.__init__()
TabularInput.assemble()
TabularInput.column_metadata()
TabularInput.combine_dataframe()
TabularInput.convert_to_form()
TabularInput.convert_to_long()
TabularInput.convert_to_short()
TabularInput.expand_defs()
TabularInput.get_column_refs()
TabularInput.get_def_dict()
TabularInput.get_worksheet()
TabularInput.reset_column_mapper()
TabularInput.reset_mapper()
TabularInput.set_cell()
TabularInput.shrink_defs()
TabularInput.to_csv()
TabularInput.to_excel()
TabularInput.validate()
TabularInput.COMMA_DELIMITER
TabularInput.EXCEL_EXTENSION
TabularInput.FILE_EXTENSION
TabularInput.FILE_INPUT
TabularInput.HED_COLUMN_NAME
TabularInput.STRING_INPUT
TabularInput.TAB_DELIMITER
TabularInput.TEXT_EXTENSION
TabularInput.columns
TabularInput.dataframe
TabularInput.dataframe_a
TabularInput.has_column_names
TabularInput.loaded_workbook
TabularInput.name
TabularInput.onsets
TabularInput.series_a
TabularInput.series_filtered
TabularInput.worksheet_name
- TabularInput
- timeseries_input
- TimeseriesInput
TimeseriesInput.__init__()
TimeseriesInput.assemble()
TimeseriesInput.column_metadata()
TimeseriesInput.combine_dataframe()
TimeseriesInput.convert_to_form()
TimeseriesInput.convert_to_long()
TimeseriesInput.convert_to_short()
TimeseriesInput.expand_defs()
TimeseriesInput.get_column_refs()
TimeseriesInput.get_def_dict()
TimeseriesInput.get_worksheet()
TimeseriesInput.reset_mapper()
TimeseriesInput.set_cell()
TimeseriesInput.shrink_defs()
TimeseriesInput.to_csv()
TimeseriesInput.to_excel()
TimeseriesInput.validate()
TimeseriesInput.COMMA_DELIMITER
TimeseriesInput.EXCEL_EXTENSION
TimeseriesInput.FILE_EXTENSION
TimeseriesInput.FILE_INPUT
TimeseriesInput.HED_COLUMN_NAME
TimeseriesInput.STRING_INPUT
TimeseriesInput.TAB_DELIMITER
TimeseriesInput.TEXT_EXTENSION
TimeseriesInput.columns
TimeseriesInput.dataframe
TimeseriesInput.dataframe_a
TimeseriesInput.has_column_names
TimeseriesInput.loaded_workbook
TimeseriesInput.name
TimeseriesInput.onsets
TimeseriesInput.series_a
TimeseriesInput.series_filtered
TimeseriesInput.worksheet_name
- TimeseriesInput
- base_input
- schema
- hed_cache
- hed_schema
- HedSchema
HedSchema.__init__()
HedSchema.check_compliance()
HedSchema.finalize_dictionaries()
HedSchema.find_tag_entry()
HedSchema.get_all_schema_tags()
HedSchema.get_all_tag_attributes()
HedSchema.get_as_mediawiki_string()
HedSchema.get_as_xml_string()
HedSchema.get_desc_iter()
HedSchema.get_formatted_version()
HedSchema.get_save_header_attributes()
HedSchema.get_schema_versions()
HedSchema.get_tag_attribute_names()
HedSchema.get_tag_description()
HedSchema.get_tag_entry()
HedSchema.get_tags_with_attribute()
HedSchema.get_unknown_attributes()
HedSchema.save_as_mediawiki()
HedSchema.save_as_xml()
HedSchema.schema_for_namespace()
HedSchema.set_schema_prefix()
HedSchema.attributes
HedSchema.library
HedSchema.merged
HedSchema.properties
HedSchema.tags
HedSchema.unit_classes
HedSchema.unit_modifiers
HedSchema.valid_prefixes
HedSchema.value_classes
HedSchema.version
HedSchema.version_number
HedSchema.with_standard
- HedSchema
- hed_schema_base
- hed_schema_constants
- HedKey
HedKey.__init__()
HedKey.AllowedCharacter
HedKey.BoolProperty
HedKey.ConversionFactor
HedKey.DefaultUnits
HedKey.DeprecatedFrom
HedKey.ElementProperty
HedKey.ExtensionAllowed
HedKey.InLibrary
HedKey.IsInheritedProperty
HedKey.Recommended
HedKey.RelatedTag
HedKey.RequireChild
HedKey.Required
HedKey.Rooted
HedKey.SIUnit
HedKey.SIUnitModifier
HedKey.SIUnitSymbolModifier
HedKey.SuggestedTag
HedKey.TagGroup
HedKey.TakesValue
HedKey.TopLevelTagGroup
HedKey.Unique
HedKey.UnitClass
HedKey.UnitClassProperty
HedKey.UnitModifierProperty
HedKey.UnitPrefix
HedKey.UnitProperty
HedKey.UnitSymbol
HedKey.ValueClass
HedKey.ValueClassProperty
- HedSectionKey
- HedKey
- hed_schema_entry
- hed_schema_group
- HedSchemaGroup
HedSchemaGroup.__init__()
HedSchemaGroup.check_compliance()
HedSchemaGroup.find_tag_entry()
HedSchemaGroup.get_formatted_version()
HedSchemaGroup.get_schema_versions()
HedSchemaGroup.get_tag_entry()
HedSchemaGroup.get_tags_with_attribute()
HedSchemaGroup.schema_for_namespace()
HedSchemaGroup.valid_prefixes
- HedSchemaGroup
- hed_schema_io
- hed_schema_section
- HedSchemaSection
- HedSchemaTagSection
- HedSchemaUnitClassSection
HedSchemaUnitClassSection.__init__()
HedSchemaUnitClassSection.get()
HedSchemaUnitClassSection.get_entries_with_attribute()
HedSchemaUnitClassSection.items()
HedSchemaUnitClassSection.keys()
HedSchemaUnitClassSection.values()
HedSchemaUnitClassSection.duplicate_names
HedSchemaUnitClassSection.section_key
- schema_attribute_validators
- schema_compare
- schema_compliance
- schema_io
- base2schema
- schema2base
- schema2wiki
- schema2xml
- schema_util
- wiki2schema
- wiki_constants
- HedWikiSection
HedWikiSection.__init__()
HedWikiSection.Attributes
HedWikiSection.EndHed
HedWikiSection.EndSchema
HedWikiSection.Epilogue
HedWikiSection.HeaderLine
HedWikiSection.Prologue
HedWikiSection.Properties
HedWikiSection.Schema
HedWikiSection.UnitModifiers
HedWikiSection.UnitsClasses
HedWikiSection.ValueClasses
- HedWikiSection
- xml2schema
- xml_constants
- schema_validation_util
- tools
- analysis
- analysis_util
- annotation_util
- column_name_summary
- event_manager
- file_dictionary
- FileDictionary
FileDictionary.__init__()
FileDictionary.create_file_dict()
FileDictionary.get_file_path()
FileDictionary.iter_files()
FileDictionary.key_diffs()
FileDictionary.make_file_dict()
FileDictionary.make_key()
FileDictionary.output_files()
FileDictionary.file_dict
FileDictionary.file_list
FileDictionary.key_list
FileDictionary.name
- FileDictionary
- hed_tag_counts
- hed_tag_manager
- hed_type
- hed_type_counts
- hed_type_defs
- hed_type_factors
- hed_type_manager
- key_map
- tabular_summary
- temporal_event
- bids
- bids_dataset
- bids_file
- bids_file_dictionary
- BidsFileDictionary
BidsFileDictionary.__init__()
BidsFileDictionary.create_file_dict()
BidsFileDictionary.get_file_path()
BidsFileDictionary.get_new_dict()
BidsFileDictionary.iter_files()
BidsFileDictionary.key_diffs()
BidsFileDictionary.make_dict()
BidsFileDictionary.make_file_dict()
BidsFileDictionary.make_key()
BidsFileDictionary.make_query()
BidsFileDictionary.match_query()
BidsFileDictionary.output_files()
BidsFileDictionary.split_by_entity()
BidsFileDictionary.file_dict
BidsFileDictionary.file_list
BidsFileDictionary.key_list
BidsFileDictionary.name
- BidsFileDictionary
- bids_file_group
- bids_sidecar_file
- bids_tabular_dictionary
- BidsTabularDictionary
BidsTabularDictionary.__init__()
BidsTabularDictionary.count_diffs()
BidsTabularDictionary.create_file_dict()
BidsTabularDictionary.get_file_path()
BidsTabularDictionary.get_info()
BidsTabularDictionary.get_new_dict()
BidsTabularDictionary.iter_files()
BidsTabularDictionary.key_diffs()
BidsTabularDictionary.make_dict()
BidsTabularDictionary.make_file_dict()
BidsTabularDictionary.make_key()
BidsTabularDictionary.make_new()
BidsTabularDictionary.make_query()
BidsTabularDictionary.match_query()
BidsTabularDictionary.output_files()
BidsTabularDictionary.report_diffs()
BidsTabularDictionary.set_tsv_info()
BidsTabularDictionary.split_by_entity()
BidsTabularDictionary.file_dict
BidsTabularDictionary.file_list
BidsTabularDictionary.key_list
BidsTabularDictionary.name
- BidsTabularDictionary
- bids_tabular_file
- remodeling
- backup_manager
- BackupManager
BackupManager.__init__()
BackupManager.create_backup()
BackupManager.get_backup()
BackupManager.get_backup_files()
BackupManager.get_backup_path()
BackupManager.get_file_key()
BackupManager.get_task()
BackupManager.restore_backup()
BackupManager.BACKUP_DICTIONARY
BackupManager.BACKUP_ROOT
BackupManager.DEFAULT_BACKUP_NAME
BackupManager.RELATIVE_BACKUP_LOCATION
- BackupManager
- cli
- dispatcher
- Dispatcher
Dispatcher.__init__()
Dispatcher.errors_to_str()
Dispatcher.get_data_file()
Dispatcher.get_schema()
Dispatcher.get_summaries()
Dispatcher.get_summary_save_dir()
Dispatcher.parse_operations()
Dispatcher.post_proc_data()
Dispatcher.prep_data()
Dispatcher.run_operations()
Dispatcher.save_summaries()
Dispatcher.REMODELING_SUMMARY_PATH
- Dispatcher
- operations
- base_op
- base_summary
- convert_columns_op
- factor_column_op
- factor_hed_tags_op
- factor_hed_type_op
- merge_consecutive_op
- number_groups_op
- number_rows_op
- remap_columns_op
- remove_columns_op
- remove_rows_op
- rename_columns_op
- reorder_columns_op
- split_rows_op
- summarize_column_names_op
- summarize_column_values_op
- summarize_definitions_op
- summarize_hed_tags_op
- summarize_hed_type_op
- summarize_hed_validation_op
- summarize_sidecar_from_events_op
- valid_operations
- backup_manager
- util
- visualization
- analysis
- validator
- def_validator
- DefValidator
DefValidator.__init__()
DefValidator.add_definitions()
DefValidator.check_for_definitions()
DefValidator.construct_def_tag()
DefValidator.construct_def_tags()
DefValidator.get()
DefValidator.get_as_strings()
DefValidator.items()
DefValidator.validate_def_tags()
DefValidator.validate_onset_offset()
DefValidator.issues
- DefValidator
- hed_validator
- onset_validator
- sidecar_validator
- spreadsheet_validator
- tag_validator
- TagValidator
TagValidator.__init__()
TagValidator.check_capitalization()
TagValidator.check_count_tag_group_parentheses()
TagValidator.check_delimiter_issues_in_hed_string()
TagValidator.check_for_invalid_extension_chars()
TagValidator.check_for_placeholder()
TagValidator.check_for_required_tags()
TagValidator.check_invalid_character_issues()
TagValidator.check_multiple_unique_tags_exist()
TagValidator.check_tag_exists_in_schema()
TagValidator.check_tag_formatting()
TagValidator.check_tag_invalid_chars()
TagValidator.check_tag_level_issue()
TagValidator.check_tag_requires_child()
TagValidator.check_tag_unit_class_units_are_valid()
TagValidator.check_tag_value_class_valid()
TagValidator.run_all_tags_validators()
TagValidator.run_hed_string_validators()
TagValidator.run_individual_tag_validators()
TagValidator.run_tag_level_validators()
TagValidator.run_validate_tag_characters()
TagValidator.validate_value_class_type()
TagValidator.CAMEL_CASE_EXPRESSION
TagValidator.CLOSING_GROUP_CHARACTER
TagValidator.COMMA
TagValidator.DEFAULT_ALLOWED_PLACEHOLDER_CHARS
TagValidator.INVALID_STRING_CHARS
TagValidator.INVALID_STRING_CHARS_PLACEHOLDERS
TagValidator.OPENING_GROUP_CHARACTER
TagValidator.TAG_ALLOWED_CHARS
TagValidator.pattern_doubleslash
- TagValidator
- tag_validator_util
- def_validator
- errors