HedValidationSummary¶

class HedValidationSummary(sum_op)[source]: Manager for summary of validation issues.

Methods

`HedValidationSummary.__init__`(sum_op)	Constructor for validation issue manager.
`HedValidationSummary.dump_summary`(filename, ...)
`HedValidationSummary.get_details_dict`(...)	Return the summary details from the summary_info.
`HedValidationSummary.get_empty_results`()	Return an empty results dictionary to use as a template.
`HedValidationSummary.get_error_list`(error_dict)	Convert errors produced by the HED validation into a list which includes filenames.
`HedValidationSummary.get_individual`(...[, ...])	Return a dictionary of the individual file summaries.
`HedValidationSummary.get_summary`([...])	Return a summary dictionary with the information.
`HedValidationSummary.get_summary_details`([...])	Return a dictionary with the details for individual files and the overall dataset.
`HedValidationSummary.get_text_summary`([...])	Return a complete text summary by assembling the individual pieces.
`HedValidationSummary.get_text_summary_details`([...])	Return a text summary of the information represented by this summary.
`HedValidationSummary.merge_all_info`()	Create a dictionary containing all the errors in the dataset.
`HedValidationSummary.save`(save_dir[, ...])	Save the summaries using the format indicated.
`HedValidationSummary.save_visualizations`(...)	Save summary visualizations, if any, using the format indicated.
`HedValidationSummary.update_error_location`(...)	Updates error information about where an error occurred in sidecar or columnar file.
`HedValidationSummary.update_summary`(new_info)	Update the summary for a given tabular input file.

Attributes

`HedValidationSummary.DISPLAY_INDENT`
`HedValidationSummary.INDIVIDUAL_SUMMARIES_PATH`

HedValidationSummary.__init__(sum_op)[source]¶

Constructor for validation issue manager.

Parameters:: sum_op (BaseOp) – Operation associated with this summary.

static HedValidationSummary.dump_summary(filename, summary)¶

HedValidationSummary.get_details_dict(summary_info)[source]¶

Return the summary details from the summary_info.

Parameters:: summary_info (dict) – Dictionary of issues
Returns:: Same summary_info as was passed in.
Return type:: dict

static HedValidationSummary.get_empty_results()[source]¶

Return an empty results dictionary to use as a template.

Returns:: Dictionary template of results info for the validation summary to fill in
Return type:: dict

static HedValidationSummary.get_error_list(error_dict, count_only=False)[source]¶

Convert errors produced by the HED validation into a list which includes filenames.

Parameters:

error_dict (dict) – Dictionary {filename: error_list} from validation.
count_only (bool) – If False (the default), a full list of errors is included otherwise only error counts.

Returns:

Error list of form [filenameA, issueA1, issueA2, …, filenameB, issueB1, …].

Return type:

list

HedValidationSummary.get_individual(summary_details, separately=True)¶

Return a dictionary of the individual file summaries.

Parameters:

summary_details (dict) – Dictionary of the individual file summaries.
separately (bool) – If True (the default), each individual summary has a header for separate output.

HedValidationSummary.get_summary(individual_summaries='separate')¶

Return a summary dictionary with the information.

Parameters:: individual_summaries (str) – “separate”, “consolidated”, or “none”
Returns:: dict - dictionary with “Dataset” and “Individual files” keys.

Notes: The individual_summaries value is processed as follows:

“separate” individual summaries are to be in separate files.
“consolidated” means that the individual summaries are in same file as overall summary.
“none” means that only the overall summary is produced.

HedValidationSummary.get_summary_details(include_individual=True)¶

Return a dictionary with the details for individual files and the overall dataset.

Parameters:: include_individual (bool) – If True, summaries for individual files are included.
Returns:: dict - a dictionary with ‘Dataset’ and ‘Individual files’ keys.

Notes

The ‘Dataset’ value is either a string or a dictionary with the overall summary.
The ‘Individual files’ value is dictionary whose keys are file names and values are
their corresponding summaries.

Users are expected to provide merge_all_info and get_details_dict functions to support this.

HedValidationSummary.get_text_summary(individual_summaries='separate')¶

Return a complete text summary by assembling the individual pieces.

Parameters:: individual_summaries (str) – One of the values “separate”, “consolidated”, or “none”.
Returns:: Complete text summary.
Return type:: str

Notes: The options are:

“none”: Just has “Dataset” key.
“consolidated” Has “Dataset” and “Individual files” keys with the values of each is a string.
“separate” Has “Dataset” and “Individual files” keys. The values of “Individual files” is a dict.

HedValidationSummary.get_text_summary_details(include_individual=True)¶

Return a text summary of the information represented by this summary.

Parameters:: include_individual (bool) – If True (the default), individual summaries are in “Individual files”.

HedValidationSummary.merge_all_info()[source]¶

Create a dictionary containing all the errors in the dataset.

Returns:: dict - dictionary of issues organized into sidecar_issues and event_issues.

HedValidationSummary.save(save_dir, file_formats=['.txt'], individual_summaries='separate', task_name='')¶

Save the summaries using the format indicated.

Parameters:

save_dir (str) – Name of the directory to save the summaries in.
file_formats (list) – List of file formats to use for saving.
individual_summaries (str) – Save one file or multiple files based on setting.
task_name (str) – If this summary corresponds to files from a task, the task_name is used in filename.

HedValidationSummary.save_visualizations(save_dir, file_formats=['.svg'], individual_summaries='separate', task_name='')¶

Save summary visualizations, if any, using the format indicated.

Parameters:

save_dir (str) – Name of the directory to save the summaries in.
file_formats (list) – List of file formats to use for saving.
individual_summaries (str) – Save one file or multiple files based on setting.
task_name (str) – If this summary corresponds to files from a task, the task_name is used in filename.

static HedValidationSummary.update_error_location(error_locations, location_name, location_key, error)[source]¶

Updates error information about where an error occurred in sidecar or columnar file.

Parameters:

error_locations (list) – List of error locations detected so far is this error.
location_name (str) – Error location name, for example ‘row’, ‘column’, or ‘sidecar column’.
location_key (str) – Standard key name for this location in the dictionary for an error.
error (dict) – Dictionary containing the information about this error.

HedValidationSummary.update_summary(new_info)[source]¶

Update the summary for a given tabular input file.

Parameters:: new_info (dict) – A dictionary with the parameters needed to update a summary.

Notes

The summary needs a “name” str, a schema, a “df”, and a “Sidecar”.

HedValidationSummary.DISPLAY_INDENT = ' '¶

HedValidationSummary.INDIVIDUAL_SUMMARIES_PATH = 'individual_summaries'¶